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Research Articles (h-index: 16, total citations: 807)

 

1.        Seki R, L. C., Fang Q, Hayashi S, Egawa S, Hu J, Xu L, Pan H, Kondo M, Sato T, Matsubara H, Kamiyama N, Kitajima K, Saito D, Liu Y, Gilbert MTP, Zhou Q, Xu X, Shiroishi T, Irie N, Tamura K, Zhang G. (2017) Functional roles of Aves class-specific cis-regulatory elements on macroevolution of bird-specific features. Nat Commun doi:10.1038/ncomms14229

2.       Gibilisco L, Zhou Q, Mahajan S, Bachtrog D.(2016)  Alternative Splicing within and between Drosophila Species, Sexes, Tissues, and Developmental Stages. PLoS Genet 9;12(12)

3.         Yin W, Wang ZJ, Li QY, Lian JM, Zhou Y, Lu BZ, Jin LJ, Qiu PX, Zhang P, Zhu WB, Wen B, Huang YJ, Lin ZL, Qiu BT, Su XW, Yang HM, Zhang GJ, Yan GM, Zhou Q*(2016) Evolutionary trajectories of snake genes and genomes revealed by comparative analyses of five-pacer viperNat Commun 6;7:13107.

4.         Zhou Q, Bachtrog D (2015) Ancestral chromatin configuration constrains chromatin evolution on differentiating sex chromosomes in Drosophila. PLoS Genet 11(6): e1005331.

5.         Zhang J, Li C, Zhou Q, Zhang G. (2015) Improving the ostrich genome assembly using optical mapping data. Gigascience. doi: 10.1186/s13742-015-0062-9.

6.         Zhou Q*, Zhang J, Bachtrog D, An N, Huang Q, Jarvis ED, Gilbert MTP, Zhang G. (2014) Sex chromosomes demonstrate complex evolutionary trajectories across bird taxa. Science 346: 1332   *correspondence author

           Highlighted by The Scientist, Faculty of 1000

7.         Wang Z, Zhang J, Yang W, An N, Zhang P, Zhang G, Zhou Q* (2014) Temporal genomic evolution of bird sex chromosomes. BMC Evol Biol 14: 250  *correspondence author

8.         Avian Genomics Consortium* (2014) Whole genome analyses resolve the early branches in the tree of life of modern birds. Science 346: 1320-1331 *together with other 103 co-authors

9.         Avian Genomics Consortium* (2014) Comparative genomics across modern bird species reveal insights into avian genome evolution and adaptation. Science 346: 1311-1320  *together with other 97 co-authors

10.        Lott SE, Villalta J, Zhou Q, Bachtrog D, Eisen M (2013) Species with more X-linked genes less effectively dosage compensate during Drosophila embryogenesis. PLoS Genet 10(2): e1004159

11.     Zhou Q, Ellison EC, Kaiser BV, Alekseyenko AA, Gorchakov AA, Bachtrog D (2013) The epigenome of evolving sex chromosomes: dosage compensation and heterochromatin formation. PloS Biol 11(11): e1001711

           Highlighted by Nature Review Genetics

12.        Alekseyenko AA, Ellison CE, Gorchakov AA, Zhou Q, Kaiser VB, Toda N, Walton Z, Peng S, Park PJ, Bachtrog D, Kuroda MI (2013) Conservation and de novo acquisition of dosage compensation on newly evolved sex chromosomes in Drosophila. Genes Dev 27: 853-858.

13.        Zhou Q, Zhu HM, Huang QF, Zhao L, Zhang GJ, Roy SW, Vicoso B, Xuan ZL, Ruan J, Zhang Y, Zhao RP, Ye C, Zhang XQ, Wang J, Wang W, Bachtrog D (2012) Deciphering neo-sex and B chromosome evolution by the draft genome of Drosophila albomicans. BMC Genomics 13: 109.

14.        Zhou Q, Bachtrog D (2012) Sex-specific adaptation drives early sex chromosome evolution in Drosophila. Science 337: 341-345.

·             Highlighted by The Scientists and Science online podcast

15.        Zhou Q, Bachtrog D (2012) Chromosome-wide gene silencing initiates Y degeneration in Drosophila. Curr Biol 22: 522-525.

16.        Zhan Z, Ding Y, Zhao R, Zhang Y, Yu H, Zhou Q, Yang S, Xiang H, Wang W (2012) Rapid functional divergence of a newly evolved polyubiquitin gene in Drosophila and its role in the trade-off between male fecundity and lifespan. Mol Biol Evol 29: 1407-1416.

17.        Long Q, Zhou Q, Ji L, Wu J, Wang W, Xie J (2012) Mycobacterium smegmatis genomic characteristics associated with its saprophyte lifestyle. J Cell Biochem 113: 3051-3055.

18.        Assis R, Zhou Q, Bachtrog D (2012) Sex-biased transcriptome evolution in Drosophila. Genome Biol Evol 4: 1189-1200.

19.        Kaiser VB, Zhou Q, Bachtrog D (2011) Nonrandom gene loss from the Drosophila miranda neo-Y chromosome. Genome Biol Evol 3: 1329-1337.

20.        Ding Y, Zhao L, Yang S, Jiang Y, Chen Y, Zhao R, Zhang Y, Zhang G, Dong Y, Yu H, Zhou Q, Wang W (2010) A young Drosophila duplicate gene plays essential roles in spermatogenesis by regulating several Y-linked male fertility genes. PLoS Genet 6: e1001255.

21.        Zhou Q, Zhang G, Zhang Y, Xu S, Zhao R, Zhan Z, Li X, Ding Y, Yang S, Wang W (2008) On the origin of new genes in Drosophila. Genome Res 18: 1446-1455.

·              Highlighted by Nature Review Genetics

22.        Zhou Q, Wang J, Huang L, Nie W, Wang J, Liu Y, Zhao X, Yang F, Wang W (2008) Neo-sex chromosomes in the black muntjac recapitulate incipient evolution of mammalian sex chromosomes. Genome Biol 9: R98.

23.        Yang S, Arguello JR, Li X, Ding Y, Zhou Q, Chen Y, Zhang Y, Zhao R, Brunet F, Peng L, Long M, Wang W (2008) Repetitive element-mediated recombination as a mechanism for new gene origination in Drosophila. PLoS Genet 4: e3.

24.        Zhou Q, Huang L, Zhang J, Zhao X, Zhang Q, Song F, Chi J, Yang F, Wang W (2006) Comparative genomic analysis links karyotypic evolution with genomic evolution in the Indian muntjac (Muntiacus muntjak vaginalis). Chromosoma 115: 427-436.

25.        Yu H, Jiang H, Zhou Q, Yang J, Cun Y, Su B, Xiao C, Wang W (2006) Origination and evolution of a human-specific transmembrane protein gene, c1orf37-dup. Hum Mol Genet 15: 1870-1875.

26.        Zhou Q, Wang W (2004) Detecting natural selection at the DNA level. Zool Res 25: 73-80.

 

 

Invited Review Articles

27.        Ding Y, Zhou Q*, Wang W (2012) Origins of new genes and evolution of their novel functions. Annu Rev Ecol Evol Syst 43: 345-363. *co-first author

28.        Zhou Q, Wang W (2008) On the origin and evolution of new genes--a genomic and experimental perspective. J Genet Genomics 35: 639-648.

 

Book Chapters

29.        Zhang J, Li J, Zhou QGenomic and Transcriptomic Analyses of Avian Sex Chromosomes and Sex-Linked Genes. Methods Mol Biol. 2017;1650:69-85. 

30.       Wang W, Zhou Q, Li X Origin of New Genes. In: Zhang G, editor. Molecular Genetics: Beijing Normal University Publishing Group. pp. in press

 

 

Articles in Press or Preparation

31.        Zhou Q, Walton Z, Dunn J, Bachtrog D (2015) Proteom evolution of young sex chromosomes of Drosophila uncoverred by ribosomal footprinting. in preparation

32.        Zhou Q*, Wang Z, Jin L, Li Q, Bachtrog D, Zhang G (2015) Genome, venome and sex chromosome evolution of a viper snake. in preparation * correspondence author